Review



hard shell pcr plates  (Bio-Rad)


Bioz Verified Symbol Bio-Rad is a verified supplier  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 96

    Structured Review

    Bio-Rad hard shell pcr plates
    Hard Shell Pcr Plates, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1413 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/pmc13092596-31-0-4
    Average 96 stars, based on 1413 article reviews
    hard shell pcr plates - by Bioz Stars, 2026-09
    96/100 stars

    Images

    Related Articles

    Polymerase Chain Reaction:

    Article Title: Nonspecific Cellular Interactions Are a Key Determinant in the Disposition of Fc-Fused Proteins.
    Article Snippet: As the diversity of therapeutic protein structures continues to evolve, it is essential to understand the mechanisms that determine their pharmacokinetic properties.. The current work was initiated to establish the physicochemical attributes and cellular processes most crucial for the target-independent disposition of proteins possessing a fragment crystallizable (Fc) region.. We systematically redesigned the surface properties of five de novogenerated protein scaffolds lacking any known binding partner in mice to produce a total of 35 Fc-fused proteins exhibiting a diverse set of physicochemical characteristics.

    Article Title: Neutrophil:lymphocyte ratio and cell-free DNA dynamics during excessive heat stress in occupational and experimental settings.
    Article Snippet: Introduction: Systemic inflammation is postulated to mediate heat stroke and heat-related organ injury, yet acute inflammatory responses among heat-stressed workers remains poorly understood.. We aimed to describe neutrophil mobilisation and potential release of DNA during heat stress in multiple hot occupational settings and a controlled experimental setting.. Methods: Neutrophil:lymphocyte ratio (NLR) was investigated in six sugarcane worker groups: Nicaraguan cohorts consisting of 1a) workers undergoing preemployment screening (N = 5257), 1b) workers with acute kidney injury (AKI, N = 470); 2) Salvadoran cane cutters (N = 45) sampled pre/post-shift before and during a rest-shade-hydration intervention; 3) Mexican cane workers performing 3a) heavy (N = 148) and 3b) light-moderate (N = 24) work, sampled pre/post shift; and 4) Honduran cane cutters sampled pre/post-shift (N = 72).

    Article Title: Structural basis for E3 ubiquitin ligase UHRF1 binding to nucleosome core particle and histone H3 ubiquitination
    Article Snippet: .. Fluorescence intensity was measured using a CFX Connect Real-Time System (Bio-Rad) and a 96-well PCR plate (Bio-Rad). ..

    Article Title: Mining Differentially Expressed Genes in the Marine Free-Living Flatworm Macrostomum lignano Under Aneuploidy-Driven Ploidy Changes.
    Article Snippet: The cartridge was covered with a DG8 gasket and loaded into the QX100 Droplet Generator (Bio-Rad Laboratories, Inc.) to generate PCR droplets. .. From each droplet mix, 40 μL was transferred to a 96-well PCR plate (Bio-Rad Laboratories, Inc., # 12001925) and sealed using PX1TM PCR https://doi.org/10.3390/cells15030245 plate Sealer (Bio-Rad Laboratories, Inc.). .. PCR thermal cycling was optimized, and the amplification signals were read using the QX100TM Droplet Reader and analyzed using QuantaSoft software v1.7.4.0917 (Bio-Rad Laboratories, Inc.).

    Article Title: Mining Differentially Expressed Genes in the Marine Free-Living Flatworm Macrostomum lignano Under Aneuploidy-Driven Ploidy Changes
    Article Snippet: The cartridge was covered with a DG8 gasket and loaded into the QX100 Droplet Generator (Bio-Rad Laboratories, Inc.) to generate PCR droplets. .. From each droplet mix, 40 μL was transferred to a 96-well PCR plate (Bio-Rad Laboratories, Inc., # 12001925) and sealed using PX1TM PCR plate Sealer (Bio-Rad Laboratories, Inc.). .. PCR thermal cycling was optimized, and the amplification signals were read using the QX100TM Droplet Reader and analyzed using QuantaSoft software v1.7.4.0917 (Bio-Rad Laboratories, Inc.).

    Article Title: Rapid identification of antigen-specific TCRs for cancer immunotherapy
    Article Snippet: .. • Culture medium: RPMI 1640 + 10%FBS • Fixable viability stain 780 (BD biosciences, Cat. 565388) • pHLA-tetramer-PE (Step 2.3) • FITC anti-mouse CD3 Antibody (Biolegend, Cat. 100204) • PerCP/Cyanine5.5 anti-mouse CD8a Antibody (Biolegend, Cat. 100734) • Recombinant RNase inhibitor (Takara, Cat. 2313B) • DEPC-treated water (Thermo scientific, Cat. R0601) • Triton X-100 (Sigma, Cat. X100PC) • dNTP mix (Takara, Cat. 639132) • 96-well PCR plate (Bio-rad, Cat. MLP9601) • Primers: listed in , synthesized in Generay • FACS Aria III (BD Biosciences) ..

    Article Title: Effects of surface-exposed sialic acid and LOS outer core on the ability of native Neisseria meningitidis outer membrane vesicles (nOMVs) to induce cytokine expression and pyroptotic pathways in THP-1-derived macrophages.
    Article Snippet: Total RNA quality 610 and concentration were assessed by loading it onto an agarose gel and using the 611 spectrophotometer NanoDrop (Thermo Scientific). .. Reverse transcription was conducted by 612 iScript cDNA Synthesis kit (Bio-Rad), and the cDNA was used to perform a real-time PCR on a 613 CFX96 System (Bio-Rad) using a customized 96-well PCR plate (H96 PrimePCR) (Bio-Rad) 614 (Figure S1). ..

    Article Title: Structural modification of oxazolidinone antibiotics alters nascent peptide stalling preference and peptide trajectory through the ribosome
    Article Snippet: In vitro transcription-translation reactions were carried out in 5 μL of the PURExpress system (NEB) containing 10 ng/μL of template DNA encoding the fluorescent protein mEGFP (gifted from the Seiple Lab) and supplemented with SUPERase-In RNase Inhibitor (Invitrogen AM2696) and the antibiotic of interest. .. Reactions were prepared on ice as a master mix of PURExpress and SUPERase-In which was added to a clear 96-well PCR plate (Bio-Rad MLL9601) containing plasmid and antibiotic or DMSO. .. Plates were sealed with clear covers (Bio-Rad MSB1001) and incubated at 37°C on CFX Duet Real-time PCR System (Bio-Rad) with fluorescent readings recorded every 5 min for 3 hr in the FAM channel (λ ex =450–490 nm, λ em =515–530 nm).

    Activation Assay:

    Article Title: Neutrophil:lymphocyte ratio and cell-free DNA dynamics during excessive heat stress in occupational and experimental settings.
    Article Snippet: Introduction: Systemic inflammation is postulated to mediate heat stroke and heat-related organ injury, yet acute inflammatory responses among heat-stressed workers remains poorly understood.. We aimed to describe neutrophil mobilisation and potential release of DNA during heat stress in multiple hot occupational settings and a controlled experimental setting.. Methods: Neutrophil:lymphocyte ratio (NLR) was investigated in six sugarcane worker groups: Nicaraguan cohorts consisting of 1a) workers undergoing preemployment screening (N = 5257), 1b) workers with acute kidney injury (AKI, N = 470); 2) Salvadoran cane cutters (N = 45) sampled pre/post-shift before and during a rest-shade-hydration intervention; 3) Mexican cane workers performing 3a) heavy (N = 148) and 3b) light-moderate (N = 24) work, sampled pre/post shift; and 4) Honduran cane cutters sampled pre/post-shift (N = 72).

    Fluorescence:

    Article Title: Structural basis for E3 ubiquitin ligase UHRF1 binding to nucleosome core particle and histone H3 ubiquitination
    Article Snippet: .. Fluorescence intensity was measured using a CFX Connect Real-Time System (Bio-Rad) and a 96-well PCR plate (Bio-Rad). ..

    Staining:

    Article Title: Rapid identification of antigen-specific TCRs for cancer immunotherapy
    Article Snippet: .. • Culture medium: RPMI 1640 + 10%FBS • Fixable viability stain 780 (BD biosciences, Cat. 565388) • pHLA-tetramer-PE (Step 2.3) • FITC anti-mouse CD3 Antibody (Biolegend, Cat. 100204) • PerCP/Cyanine5.5 anti-mouse CD8a Antibody (Biolegend, Cat. 100734) • Recombinant RNase inhibitor (Takara, Cat. 2313B) • DEPC-treated water (Thermo scientific, Cat. R0601) • Triton X-100 (Sigma, Cat. X100PC) • dNTP mix (Takara, Cat. 639132) • 96-well PCR plate (Bio-rad, Cat. MLP9601) • Primers: listed in , synthesized in Generay • FACS Aria III (BD Biosciences) ..

    Recombinant:

    Article Title: Rapid identification of antigen-specific TCRs for cancer immunotherapy
    Article Snippet: .. • Culture medium: RPMI 1640 + 10%FBS • Fixable viability stain 780 (BD biosciences, Cat. 565388) • pHLA-tetramer-PE (Step 2.3) • FITC anti-mouse CD3 Antibody (Biolegend, Cat. 100204) • PerCP/Cyanine5.5 anti-mouse CD8a Antibody (Biolegend, Cat. 100734) • Recombinant RNase inhibitor (Takara, Cat. 2313B) • DEPC-treated water (Thermo scientific, Cat. R0601) • Triton X-100 (Sigma, Cat. X100PC) • dNTP mix (Takara, Cat. 639132) • 96-well PCR plate (Bio-rad, Cat. MLP9601) • Primers: listed in , synthesized in Generay • FACS Aria III (BD Biosciences) ..

    Synthesized:

    Article Title: Rapid identification of antigen-specific TCRs for cancer immunotherapy
    Article Snippet: .. • Culture medium: RPMI 1640 + 10%FBS • Fixable viability stain 780 (BD biosciences, Cat. 565388) • pHLA-tetramer-PE (Step 2.3) • FITC anti-mouse CD3 Antibody (Biolegend, Cat. 100204) • PerCP/Cyanine5.5 anti-mouse CD8a Antibody (Biolegend, Cat. 100734) • Recombinant RNase inhibitor (Takara, Cat. 2313B) • DEPC-treated water (Thermo scientific, Cat. R0601) • Triton X-100 (Sigma, Cat. X100PC) • dNTP mix (Takara, Cat. 639132) • 96-well PCR plate (Bio-rad, Cat. MLP9601) • Primers: listed in , synthesized in Generay • FACS Aria III (BD Biosciences) ..

    FACS:

    Article Title: Rapid identification of antigen-specific TCRs for cancer immunotherapy
    Article Snippet: .. • Culture medium: RPMI 1640 + 10%FBS • Fixable viability stain 780 (BD biosciences, Cat. 565388) • pHLA-tetramer-PE (Step 2.3) • FITC anti-mouse CD3 Antibody (Biolegend, Cat. 100204) • PerCP/Cyanine5.5 anti-mouse CD8a Antibody (Biolegend, Cat. 100734) • Recombinant RNase inhibitor (Takara, Cat. 2313B) • DEPC-treated water (Thermo scientific, Cat. R0601) • Triton X-100 (Sigma, Cat. X100PC) • dNTP mix (Takara, Cat. 639132) • 96-well PCR plate (Bio-rad, Cat. MLP9601) • Primers: listed in , synthesized in Generay • FACS Aria III (BD Biosciences) ..

    Reverse Transcription:

    Article Title: Effects of surface-exposed sialic acid and LOS outer core on the ability of native Neisseria meningitidis outer membrane vesicles (nOMVs) to induce cytokine expression and pyroptotic pathways in THP-1-derived macrophages.
    Article Snippet: Total RNA quality 610 and concentration were assessed by loading it onto an agarose gel and using the 611 spectrophotometer NanoDrop (Thermo Scientific). .. Reverse transcription was conducted by 612 iScript cDNA Synthesis kit (Bio-Rad), and the cDNA was used to perform a real-time PCR on a 613 CFX96 System (Bio-Rad) using a customized 96-well PCR plate (H96 PrimePCR) (Bio-Rad) 614 (Figure S1). ..

    cDNA Synthesis:

    Article Title: Effects of surface-exposed sialic acid and LOS outer core on the ability of native Neisseria meningitidis outer membrane vesicles (nOMVs) to induce cytokine expression and pyroptotic pathways in THP-1-derived macrophages.
    Article Snippet: Total RNA quality 610 and concentration were assessed by loading it onto an agarose gel and using the 611 spectrophotometer NanoDrop (Thermo Scientific). .. Reverse transcription was conducted by 612 iScript cDNA Synthesis kit (Bio-Rad), and the cDNA was used to perform a real-time PCR on a 613 CFX96 System (Bio-Rad) using a customized 96-well PCR plate (H96 PrimePCR) (Bio-Rad) 614 (Figure S1). ..

    Real-time Polymerase Chain Reaction:

    Article Title: Effects of surface-exposed sialic acid and LOS outer core on the ability of native Neisseria meningitidis outer membrane vesicles (nOMVs) to induce cytokine expression and pyroptotic pathways in THP-1-derived macrophages.
    Article Snippet: Total RNA quality 610 and concentration were assessed by loading it onto an agarose gel and using the 611 spectrophotometer NanoDrop (Thermo Scientific). .. Reverse transcription was conducted by 612 iScript cDNA Synthesis kit (Bio-Rad), and the cDNA was used to perform a real-time PCR on a 613 CFX96 System (Bio-Rad) using a customized 96-well PCR plate (H96 PrimePCR) (Bio-Rad) 614 (Figure S1). ..

    Plasmid Preparation:

    Article Title: Structural modification of oxazolidinone antibiotics alters nascent peptide stalling preference and peptide trajectory through the ribosome
    Article Snippet: In vitro transcription-translation reactions were carried out in 5 μL of the PURExpress system (NEB) containing 10 ng/μL of template DNA encoding the fluorescent protein mEGFP (gifted from the Seiple Lab) and supplemented with SUPERase-In RNase Inhibitor (Invitrogen AM2696) and the antibiotic of interest. .. Reactions were prepared on ice as a master mix of PURExpress and SUPERase-In which was added to a clear 96-well PCR plate (Bio-Rad MLL9601) containing plasmid and antibiotic or DMSO. .. Plates were sealed with clear covers (Bio-Rad MSB1001) and incubated at 37°C on CFX Duet Real-time PCR System (Bio-Rad) with fluorescent readings recorded every 5 min for 3 hr in the FAM channel (λ ex =450–490 nm, λ em =515–530 nm).



    Similar Products

    96
    Bio-Rad hard shell pcr plates
    Hard Shell Pcr Plates, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/pmc13092596-31-0-4
    Average 96 stars, based on 1 article reviews
    hard shell pcr plates - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    95
    Eppendorf AG protein lobind 96 well plate
    Protein Lobind 96 Well Plate, supplied by Eppendorf AG, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Eppendorf+twin%2Etec+PCR+plate+96+LoBind/bio_rxiv__64898__2026__05__05__722986-289-9-13
    Average 95 stars, based on 1 article reviews
    protein lobind 96 well plate - by Bioz Stars, 2026-09
    95/100 stars
      Buy from Supplier

    96
    Bio-Rad hard shell pcr plate
    Hard Shell Pcr Plate, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/pm42091886-326-17-20
    Average 96 stars, based on 1 article reviews
    hard shell pcr plate - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    96
    Bio-Rad hard shell 96 well pcr plate
    Hard Shell 96 Well Pcr Plate, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/bio_rxiv__64898__2026__04__29__721539-172-7-11
    Average 96 stars, based on 1 article reviews
    hard shell 96 well pcr plate - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    96
    Bio-Rad 96 well pcr plate
    96 Well Pcr Plate, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Multiplate+96-Well+PCR+Plates/pmc13153718-200-62-66
    Average 96 stars, based on 1 article reviews
    96 well pcr plate - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    96
    Bio-Rad pcr plates hsp9601
    Pcr Plates Hsp9601, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/pmc13132228-74-9-6
    Average 96 stars, based on 1 article reviews
    pcr plates hsp9601 - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    96
    Bio-Rad bio rad hard shell 96
    Bio Rad Hard Shell 96, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/pmc13132228-74-6-6
    Average 96 stars, based on 1 article reviews
    bio rad hard shell 96 - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    95
    Eppendorf AG 96 well plate
    (A) Combinatorial indexing workflow for single-cell CoCUT&Tag. (1) Whole cells were permeabilized, bound to magnetic beads, and lightly crosslinked to prevent aggregation, after which (2) rabbit and mouse primary antibodies were bound in bulk, (3) followed by binding of the corresponding SunTag and MoonTag scaffolds. (4) Cells were then distributed across <t>a</t> <t>96-well</t> plate for sequential rounds of anti-SunTag-Tn5 binding and tagmentation, (5) followed by anti-MoonTag-Tn5 binding and tagmentation. Keeping cells arrayed in the same plate preserves the cellular linkage between the barcodes from the first and second round of tagmentation. (6) This is followed by split-pool indexing during PCR on a nanowell dispenser. This approach yields up to 50,000 single-cell profiles per reaction, and starting with 1 million cells typically yields enough material for 4 split-pooling reactions. (B,C) Antibody and scaffold optimization for H3K4me3 (B) and H3K27me3 (C). Selected rabbit and mouse antibodies perform comparably to or better than standard CUT&Tag when paired with 12x SunTag or MoonTag constructs. (D,E) PBMC H3K4me3 quality control. UMAP projection colored by TSS enrichment (D) and cluster-level TSS enrichment used to identify low-quality clusters for removal (E). (F,G) Doublet detection and removal for PBMC H3K4me3 data using ArchR-based synthetic doublet scoring and cluster-level doublet enrichment. (H,I) Analogous doublet filtering and quality control for PBMC H3K27me3 data. (J) PBMC weighted nearest neighbor UMAP-embedding colored by the ArchR-imputed H3K4me3 gene scores (top) and H3K27me3 gene scores (bottom), for marker genes enriched in B-cells ( PAX5 ), NK Cells ( KLRD1 ), T cells ( LEF1 ), monocytes ( KLF4 ) and Cytotoxic T cells ( RORC ).
    96 Well Plate, supplied by Eppendorf AG, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Eppendorf+twin%2Etec+PCR+plate+96+LoBind/bio_rxiv__64898__2026__04__27__721191-395-12-14
    Average 95 stars, based on 1 article reviews
    96 well plate - by Bioz Stars, 2026-09
    95/100 stars
      Buy from Supplier

    96
    Bio-Rad equipment dellaporta total nucleic acid extraction reagents cfx96 touchtm real time pcr detection system bio radtm qpcr plates
    (A) Combinatorial indexing workflow for single-cell CoCUT&Tag. (1) Whole cells were permeabilized, bound to magnetic beads, and lightly crosslinked to prevent aggregation, after which (2) rabbit and mouse primary antibodies were bound in bulk, (3) followed by binding of the corresponding SunTag and MoonTag scaffolds. (4) Cells were then distributed across <t>a</t> <t>96-well</t> plate for sequential rounds of anti-SunTag-Tn5 binding and tagmentation, (5) followed by anti-MoonTag-Tn5 binding and tagmentation. Keeping cells arrayed in the same plate preserves the cellular linkage between the barcodes from the first and second round of tagmentation. (6) This is followed by split-pool indexing during PCR on a nanowell dispenser. This approach yields up to 50,000 single-cell profiles per reaction, and starting with 1 million cells typically yields enough material for 4 split-pooling reactions. (B,C) Antibody and scaffold optimization for H3K4me3 (B) and H3K27me3 (C). Selected rabbit and mouse antibodies perform comparably to or better than standard CUT&Tag when paired with 12x SunTag or MoonTag constructs. (D,E) PBMC H3K4me3 quality control. UMAP projection colored by TSS enrichment (D) and cluster-level TSS enrichment used to identify low-quality clusters for removal (E). (F,G) Doublet detection and removal for PBMC H3K4me3 data using ArchR-based synthetic doublet scoring and cluster-level doublet enrichment. (H,I) Analogous doublet filtering and quality control for PBMC H3K27me3 data. (J) PBMC weighted nearest neighbor UMAP-embedding colored by the ArchR-imputed H3K4me3 gene scores (top) and H3K27me3 gene scores (bottom), for marker genes enriched in B-cells ( PAX5 ), NK Cells ( KLRD1 ), T cells ( LEF1 ), monocytes ( KLF4 ) and Cytotoxic T cells ( RORC ).
    Equipment Dellaporta Total Nucleic Acid Extraction Reagents Cfx96 Touchtm Real Time Pcr Detection System Bio Radtm Qpcr Plates, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/96+well+pcr+plate/Hard-Shell+96-Well+PCR+Plates/pm42007969-78-69-85
    Average 96 stars, based on 1 article reviews
    equipment dellaporta total nucleic acid extraction reagents cfx96 touchtm real time pcr detection system bio radtm qpcr plates - by Bioz Stars, 2026-09
    96/100 stars
      Buy from Supplier

    Image Search Results


    (A) Combinatorial indexing workflow for single-cell CoCUT&Tag. (1) Whole cells were permeabilized, bound to magnetic beads, and lightly crosslinked to prevent aggregation, after which (2) rabbit and mouse primary antibodies were bound in bulk, (3) followed by binding of the corresponding SunTag and MoonTag scaffolds. (4) Cells were then distributed across a 96-well plate for sequential rounds of anti-SunTag-Tn5 binding and tagmentation, (5) followed by anti-MoonTag-Tn5 binding and tagmentation. Keeping cells arrayed in the same plate preserves the cellular linkage between the barcodes from the first and second round of tagmentation. (6) This is followed by split-pool indexing during PCR on a nanowell dispenser. This approach yields up to 50,000 single-cell profiles per reaction, and starting with 1 million cells typically yields enough material for 4 split-pooling reactions. (B,C) Antibody and scaffold optimization for H3K4me3 (B) and H3K27me3 (C). Selected rabbit and mouse antibodies perform comparably to or better than standard CUT&Tag when paired with 12x SunTag or MoonTag constructs. (D,E) PBMC H3K4me3 quality control. UMAP projection colored by TSS enrichment (D) and cluster-level TSS enrichment used to identify low-quality clusters for removal (E). (F,G) Doublet detection and removal for PBMC H3K4me3 data using ArchR-based synthetic doublet scoring and cluster-level doublet enrichment. (H,I) Analogous doublet filtering and quality control for PBMC H3K27me3 data. (J) PBMC weighted nearest neighbor UMAP-embedding colored by the ArchR-imputed H3K4me3 gene scores (top) and H3K27me3 gene scores (bottom), for marker genes enriched in B-cells ( PAX5 ), NK Cells ( KLRD1 ), T cells ( LEF1 ), monocytes ( KLF4 ) and Cytotoxic T cells ( RORC ).

    Journal: bioRxiv

    Article Title: CoCUT&Tag maps linked chromatin states at single-molecule, single-cell resolution

    doi: 10.64898/2026.04.27.721191

    Figure Lengend Snippet: (A) Combinatorial indexing workflow for single-cell CoCUT&Tag. (1) Whole cells were permeabilized, bound to magnetic beads, and lightly crosslinked to prevent aggregation, after which (2) rabbit and mouse primary antibodies were bound in bulk, (3) followed by binding of the corresponding SunTag and MoonTag scaffolds. (4) Cells were then distributed across a 96-well plate for sequential rounds of anti-SunTag-Tn5 binding and tagmentation, (5) followed by anti-MoonTag-Tn5 binding and tagmentation. Keeping cells arrayed in the same plate preserves the cellular linkage between the barcodes from the first and second round of tagmentation. (6) This is followed by split-pool indexing during PCR on a nanowell dispenser. This approach yields up to 50,000 single-cell profiles per reaction, and starting with 1 million cells typically yields enough material for 4 split-pooling reactions. (B,C) Antibody and scaffold optimization for H3K4me3 (B) and H3K27me3 (C). Selected rabbit and mouse antibodies perform comparably to or better than standard CUT&Tag when paired with 12x SunTag or MoonTag constructs. (D,E) PBMC H3K4me3 quality control. UMAP projection colored by TSS enrichment (D) and cluster-level TSS enrichment used to identify low-quality clusters for removal (E). (F,G) Doublet detection and removal for PBMC H3K4me3 data using ArchR-based synthetic doublet scoring and cluster-level doublet enrichment. (H,I) Analogous doublet filtering and quality control for PBMC H3K27me3 data. (J) PBMC weighted nearest neighbor UMAP-embedding colored by the ArchR-imputed H3K4me3 gene scores (top) and H3K27me3 gene scores (bottom), for marker genes enriched in B-cells ( PAX5 ), NK Cells ( KLRD1 ), T cells ( LEF1 ), monocytes ( KLF4 ) and Cytotoxic T cells ( RORC ).

    Article Snippet: Next, 15 μL of sample was added to each well of a 96-well plate (Eppendorf, cat. no. 0030129504) with frequent mixing in between additions to prevent bead bound cells from settling to the bottom of the tube.

    Techniques: Single Cell, Magnetic Beads, Binding Assay, Construct, Control, Marker